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C161 interrupt/RTC question

I'm doing an application containing some I2C code on a Infineon C161PI. When I put the I2C code into main, everything works alright. When I put it into a timer ISR, it works, too. But when I try to execute the I2C code (takes less than 1ms to execute) in the RTC ISR (called each second), the code doesn't work anymore. Any suggestions ?

Michael